Drexel dragonThe Math ForumDonate to the Math Forum



Search All of the Math Forum:

Views expressed in these public forums are not endorsed by Drexel University or The Math Forum.


Math Forum » Discussions » sci.math.* » sci.stat.math.independent

Topic: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs

Replies: 148   Last Post: May 8, 2012 3:40 AM

Advanced Search

Back to Topic List Back to Topic List Jump to Tree View Jump to Tree View   Messages: [ Previous | Next ]
Halitsky

Posts: 600
Registered: 2/3/09
Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs

Posted: Apr 14, 2012 4:32 PM
  Click to see the message monospaced in plain text Plain Text   Click to reply to this topic Reply

Here are the coefficients and sig values for the two correlations c/e
vs c/L and c/u vs c/L for all ten length intervals for the b.1
(immunoglobulin) fold:

c/e c/u
vs vs
Len c/L c/L
Int N Coeff Sig Coeff Sig

13-22 988 0.565 3.0E-84 0.606 3.2E-100
23-32 810 0.569 1.4E-70 0.655 1.8E-100
33-42 700 0.617 8.9E-75 0.643 7.5E-83
43-52 565 0.657 3.8E-71 0.609 1.0E-58
53-62 517 0.683 3.6E-72 0.642 2.0E-61
63-72 402 0.750 9.8E-74 0.669 1.9E-53
73-82 381 0.714 1.3E-60 0.683 9.7E-54
83-92 333 0.667 3.5E-44 0.485 5.1E-21
93-102 248 0.710 2.3E-39 0.405 3.5E-11
103-112 184 0.607 6.4E-20 0.451 1.3E-10

I'm hoping these additional data will help you make a decision as to
whether these two linear correlations are OK to use (of course
assuming that they are at least as good, if not better, for the other
five folds ...). If you want to see the underlying raw data, I can
send you the ten spreads off-line.

Also, note how the coefficients of the c/e vs c/L correlations are
lower for the first two length intervals, while the coefficients of
the c/u vs c/L correlations are lower for the last three length
intervals. This probably reflects an intrinsic property of the data
which is responsible for the difficulty I've had in certain folds
(like b1) when I'v tried to get a direct correlation between u and e
within length intervals.


Date Subject Author
4/1/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/3/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/3/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/6/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/6/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/6/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/7/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/7/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/8/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/8/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/9/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/9/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/9/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/9/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/9/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/10/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/10/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/11/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/11/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/11/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/11/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/11/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/11/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Art Kendall
4/11/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/13/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/13/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/13/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/14/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/14/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/14/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/14/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/14/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/14/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/15/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/15/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/15/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/15/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/16/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/16/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/16/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/16/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/16/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/16/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/16/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/17/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/17/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/17/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/18/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/19/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/19/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
gimpeltf@hotmail.com
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
gimpeltf@hotmail.com
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
gimpeltf@hotmail.com
4/21/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
gimpeltf@hotmail.com
4/21/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/24/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/22/12
Read Our first control group result is precisely how we want AML's program
to behave with control group data ....
Halitsky
4/23/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/24/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/24/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/24/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/24/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/26/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/26/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/26/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/27/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/27/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/27/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/28/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/28/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/28/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/28/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/28/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
gimpeltf@hotmail.com
4/28/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/28/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
gimpeltf@hotmail.com
4/28/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/29/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/29/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/29/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/29/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/29/12
Read Your questions go to the "moment of truth" that Jacques and Arthur
may shortly be facing
Halitsky
4/29/12
Read Re: Your questions go to the "moment of truth" that Jacques and
Arthur may shortly be facing
Halitsky
4/29/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/30/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/30/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/30/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/30/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/30/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/30/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/30/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
5/1/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
5/1/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
5/1/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
5/1/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
5/1/12
Read Results for c1 study and control groups when model run WITHOUT the
four cells for shortest length interval 33-42
Halitsky
5/2/12
Read Results on c2 fold confirm peculiarity of length interval 33-42 seen
in c1 fold results
Halitsky
5/2/12
Read Model with adjusted weighting logic now works on c2 fold! (but PLEASE
review my new weighting logic !)
Halitsky
5/2/12
Read Actually, your original suggestion (input counts) works as well as
what I just posted for the c2 fold
Halitsky
5/3/12
Read Re: Actually, your original suggestion (input counts) works as well
as what I just posted for the c2 fold
Ray Koopman
5/3/12
Read Re: Actually, your original suggestion (input counts) works as well
as what I just posted for the c2 fold
Halitsky
5/3/12
Read Comparative results for {lnL,w,lnLw,x1,x2} & {lnL,w,lnLw,x1,x2,lnLx1,lnLx2}
Halitsky
5/4/12
Read Re: Comparative results for {lnL,w,lnLw,x1,x2} & {lnL,w,lnLw,x1,x2,lnLx1,lnLx2}
Ray Koopman
5/4/12
Read Re: Comparative results for {lnL,w,lnLw,x1,x2} & {lnL,w,lnLw,x1,x2,lnLx1,lnLx2}
Halitsky
5/4/12
Read Your question re significance of proportion involving counts of
01:10:01:11 inputs to Arthur's program
Halitsky
5/4/12
Read Results of both chi-square tests on all six folds
Halitsky
5/4/12
Read Re: Comparative results for {lnL,w,lnLw,x1,x2} & {lnL,w,lnLw,x1,x2,lnLx1,lnLx2}
Halitsky
5/4/12
Read I'm sending the a1 CI table off-line, since the format didn't hold here.
Halitsky
5/5/12
Read Re: I'm sending the a1 CI table off-line, since the format didn't
hold here.
Halitsky
5/5/12
Read Re: I'm sending the a1 CI table off-line, since the format didn't
hold here.
Ray Koopman
5/5/12
Read Re: I'm sending the a1 CI table off-line, since the format didn't
hold here.
Halitsky
5/7/12
Read Re: I'm sending the a1 CI table off-line, since the format didn't
hold here.
Halitsky
5/7/12
Read Re: I'm sending the a1 CI table off-line, since the format didn't
hold here.
Halitsky
5/8/12
Read Re: I'm sending the a1 CI table off-line, since the format didn't
hold here.
Ray Koopman
5/8/12
Read Re: I'm sending the a1 CI table off-line, since the format didn't
hold here.
Halitsky
5/6/12
Read Re: I'm sending the a1 CI table off-line, since the format didn't
hold here.
Ray Koopman
5/3/12
Read Could I ask you to check this 1st test using sum of chi-squares from
study vs control cells ?
Halitsky
5/3/12
Read Re: Could I ask you to check this 1st test using sum of chi-squares
from study vs control cells ?
Ray Koopman
5/3/12
Read Re: Could I ask you to check this 1st test using sum of chi-squares
from study vs control cells ?
Halitsky
5/3/12
Read Could I ask you to check this 1st test using converged likelihoods
for study/control/pooled runs?
Halitsky
5/3/12
Read Re: Could I ask you to check this 1st test using converged
likelihoods for study/control/pooled runs?
Ray Koopman
5/3/12
Read Re: Could I ask you to check this 1st test using converged
likelihoods for study/control/pooled runs?
Halitsky
5/1/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/27/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/28/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Ray Koopman
4/28/12
Read Re: Our first control group result is precisely how we want AML's
program to behave with control group data ....
Halitsky
4/24/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/19/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/20/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/16/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/16/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/16/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/14/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman
4/13/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Halitsky
4/8/12
Read Re: Correct way to normalize an rmsd-based distance metric used in
repeated trials of pairs
Ray Koopman

Point your RSS reader here for a feed of the latest messages in this topic.

[Privacy Policy] [Terms of Use]

© Drexel University 1994-2014. All Rights Reserved.
The Math Forum is a research and educational enterprise of the Drexel University School of Education.